Commit
•
fa2ac91
1
Parent(s):
60e9b88
Upload EsmForProteinFolding
Browse files- config.json +103 -0
- pytorch_model.bin +3 -0
config.json
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{
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"architectures": [
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"EsmForProteinFolding"
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],
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"attention_probs_dropout_prob": 0.0,
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"classifier_dropout": null,
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"emb_layer_norm_before": false,
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"esmfold_config": {
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"bypass_lm": false,
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"embed_aa": true,
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"esm_ablate_pairwise": false,
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"esm_ablate_sequence": false,
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"esm_input_dropout": 0,
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"esm_type": "esm2_3B",
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"fp16_esm": true,
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"lddt_head_hid_dim": 128,
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"trunk": {
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"chunk_size": null,
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"cpu_grad_checkpoint": false,
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"dropout": 0,
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"layer_drop": 0,
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"max_recycles": 4,
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"num_blocks": 48,
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"pairwise_head_width": 32,
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"pairwise_state_dim": 128,
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"position_bins": 32,
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"sequence_head_width": 32,
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"sequence_state_dim": 1024,
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"structure_module": {
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"dropout_rate": 0.1,
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"epsilon": 1e-08,
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"inf": 100000.0,
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"ipa_dim": 16,
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"num_angles": 7,
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"num_blocks": 8,
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"num_heads_ipa": 12,
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"num_qk_points": 4,
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"num_resnet_blocks": 2,
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"num_transition_layers": 1,
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"num_v_points": 8,
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"pairwise_dim": 128,
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"resnet_dim": 128,
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"sequence_dim": 384,
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"trans_scale_factor": 10
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}
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},
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"use_esm_attn_map": false
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},
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.0,
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"hidden_size": 2560,
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"initializer_range": 0.02,
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"intermediate_size": 10240,
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"is_folding_model": true,
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"layer_norm_eps": 1e-05,
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"mask_token_id": 32,
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"max_position_embeddings": 1026,
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"model_type": "esm",
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"num_attention_heads": 40,
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"num_hidden_layers": 36,
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"pad_token_id": 1,
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"position_embedding_type": "rotary",
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"token_dropout": true,
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"torch_dtype": "float32",
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"transformers_version": "4.25.0.dev0",
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"use_cache": true,
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"vocab_list": [
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"<cls>",
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"<pad>",
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"<eos>",
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"<unk>",
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"L",
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"A",
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"G",
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"V",
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"S",
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"E",
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"R",
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"T",
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"I",
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"D",
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"P",
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"K",
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"Q",
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"N",
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"F",
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"Y",
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"M",
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"H",
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"W",
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"C",
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"X",
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"B",
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"U",
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"Z",
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"O",
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".",
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"-",
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"<null_1>",
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"<mask>"
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],
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"vocab_size": 33
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}
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pytorch_model.bin
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:2ee07356b125d1e3e57503c204111fd7323347fc4735d41d3caac57c2a78e116
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size 8442062570
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