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hexviz

Commit History

Limit sequence input length to 400
920aa4b

aksell commited on

Default to protein selection panel being open
3d40087

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Expander with pdb code, file or sequence input
c8fb9e8

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WIP Add option to upload PDB files
5d3313d

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Option to toggle ligand showing
722bda7

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Hide ligands for hidden chains.
a48c45b

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Removed redundant ligand styling
5f136f2

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Zoom to selected chain if only 1 selected
4501102

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Also show non carbons in side chains
87df996

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Button to show sidechains for labeled resis
d222aaa

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Label residues with highest sum of attention not highest pairs
42ad7ef

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Store selected head and layer in attention visualization
599e725

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Check session state with .get
92ba471

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Store selected sequence slice
fd3cdd5

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Store selected head and layer sequence
2d68959

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Add report a bug and get help link + about us text
48a0092

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Clear selected chains when PDB is changed
8496929

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Hide manual labeling behind selector
a5100f8

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Share pdb selector between views
c2b2898

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Persist selected PDB, chain and model in session state
708426b

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Change example PDB to one with a ligand
ae26fb8

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Show ligands
2e6af7e

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🧬emojis in filenames!
e8f7474

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Capitalize page name
179d4fd

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Update text description
c438fc8

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Don't skip heads and layers by deafult
7a11152

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Allow selecting chain ID in heatmap
e9d64be

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Allow plotting single row or column or a single head
13af878

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Use dynamic offset for row labels, makes them nice ✨
5ddca75

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Fix subplot sizing and bug
0fa194b

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Copy attention tensor to CPU for streamlit caching
9d9c196

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Allow selecting heads to plot
8799d0b

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Fix README typo
28de159

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Change default selected head to a more interesting one
fb742f5

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Tweak interesting heads view
18e02d3

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Add text and slice selection to head selection view
51f3451

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Rename app.py to Attention_Visualization.py
a9afebb

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First draft of "Find interesting heads" page
2410bbd

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Add table of top_n attention pairs
b7cb94d

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Make model selector more compact
1b13d7f

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Add sections to sidebar
b3a37f0

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Move attention parameters to sidebar
6bb6142

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Label top n attention pairs
4355c21

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Change default layer and tweak text
beb84f6

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Allow highlighting of residues
61419b7

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Allow selecting individual chains
58b87e3

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Plot avg attention not sum
3de389d

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Reduce attention cylinder size
97dc04c

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Acknowledge provis in the README
2baeea3

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Remove Prot-T5 and ProtGPT2
386fb31

aksell commited on