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AI4PD
/
hexviz
like
6
Sleeping
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Files
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1
a71a737
hexviz
Commit History
Add ruff, run ruff and black
a71a737
aksell
commited on
May 4, 2023
Fix links in documentation
7a18fac
aksell
commited on
May 3, 2023
Fix residue indexing error
7c0cc4e
aksell
commited on
Apr 28, 2023
Show chain in table of top residues
01ba5a1
aksell
commited on
Apr 28, 2023
Don't add EC number chars to top residues
528cd6e
aksell
commited on
Apr 28, 2023
Catch potential KeyError from chain
14646a1
aksell
commited on
Apr 28, 2023
Visualize EC tags for multiple chains
b6e0c9a
aksell
commited on
Apr 28, 2023
WIP visualize EC number and attention to it
9f086ee
aksell
commited on
Apr 27, 2023
Remove unused attention pair values
f7e76de
aksell
commited on
Apr 27, 2023
Fix links in documentation
b09c0bf
aksell
commited on
Apr 26, 2023
Remove debug print
b5726b3
aksell
commited on
Apr 24, 2023
Remove attention to special tokens in find interesting heads
491bdcd
aksell
commited on
Apr 24, 2023
Fix reomval of special tokens for T5
1ce487e
aksell
commited on
Apr 24, 2023
Fix bug in plot of single head
703d569
aksell
commited on
Apr 24, 2023
Open links to app in current iframe
48c14d0
aksell
commited on
Apr 24, 2023
Don't remove special tokens in identify interesting heads
e13695f
aksell
commited on
Apr 24, 2023
Add plot of single head
214c50a
aksell
commited on
Apr 24, 2023
Test write shape of tensor
1804445
aksell
commited on
Apr 24, 2023
Also validate sequences in second view
ca475ac
aksell
commited on
Apr 24, 2023
Add ProtT5
852aa1f
aksell
commited on
Apr 24, 2023
Remove docks from main page and list supported models
c663b1c
aksell
commited on
Apr 21, 2023
Format with Black
a2cfd88
aksell
commited on
Apr 21, 2023
Specify default theme
8cef26d
aksell
commited on
Apr 21, 2023
Add documentation page
611049a
aksell
commited on
Apr 21, 2023
Rename subpage to ensure correct ordering in sidebar
3c4fdda
aksell
commited on
Apr 21, 2023
Don't zero pad residue IDs in top attention table
5166e2c
aksell
commited on
Apr 20, 2023
Update description text
a789c1f
aksell
commited on
Apr 20, 2023
Fix ProtBert tensors stored on different devices
d7eabb7
aksell
commited on
Apr 20, 2023
Ignore FASTA headers in sequence input
6d2a9ed
aksell
commited on
Apr 20, 2023
Cache prot bert tokenizer and model separately
dacbc43
aksell
commited on
Apr 13, 2023
Remove print
695df3e
aksell
commited on
Apr 13, 2023
Use gpu device for prot bert
2e9b6cc
aksell
commited on
Apr 13, 2023
Don't hash tokenizer for ZymCTRL
b42d000
aksell
commited on
Apr 13, 2023
Try to not use GPU device for ZymCTRL
daf1c3b
aksell
commited on
Apr 13, 2023
Use right structure in select interesting heads
220f138
aksell
commited on
Apr 11, 2023
Clear state using on_change
b868bfd
aksell
commited on
Apr 11, 2023
Add PROT BERT
cab68af
aksell
commited on
Apr 11, 2023
Store user sequence in cache
18c737e
aksell
commited on
Apr 11, 2023
Use widget state for sequence slice slider
110826a
aksell
commited on
Apr 11, 2023
Default to protein selector expander open
c2046b3
aksell
commited on
Apr 11, 2023
Use widget state for chain, head, layer, step in plot view
f947509
aksell
commited on
Apr 11, 2023
Use widget state for selected model
650204b
aksell
commited on
Apr 11, 2023
Use widget state for selected chains
777e09c
aksell
commited on
Apr 11, 2023
Make layer and head selection less buggy
0ae789a
aksell
commited on
Apr 11, 2023
Clean and validate sequences
26717fa
aksell
commited on
Apr 5, 2023
Try formatting tags as yaml list to see if they're caught
cfd6b27
aksell
commited on
Apr 5, 2023
Explain why get_attention re-parses the pdb
4ff156e
aksell
commited on
Apr 5, 2023
Use Python 3.10.5
2d77790
aksell
commited on
Apr 5, 2023
Add tags to the space config
5563518
aksell
commited on
Apr 5, 2023
Limit sequence input length to 400
920aa4b
aksell
commited on
Apr 5, 2023
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