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bpRNA-new
bpRNA-new is a database of single molecule secondary structures annotated using bpRNA.
bpRNA-new is a dataset of RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability. It focuses on families distinct from those in bpRNA-1m, providing a robust benchmark for evaluating model performance on unseen RNA families.
Disclaimer
This is an UNOFFICIAL release of the bpRNA-new by Kengo Sato, Manato Akiyama and Yasubumi Sakakibara.
The team releasing bpRNA-new did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.
Related Datasets
- bpRNA-1m: A database of single molecule secondary structures annotated using bpRNA.
- bpRNA-spot: A subset of bpRNA-1m that applies CD-HIT (CD-HIT-EST) to remove sequences with more than 80% sequence similarity from bpRNA-1m.
License
This dataset is licensed under the AGPL-3.0 License.
SPDX-License-Identifier: AGPL-3.0-or-later
Citation
@article{sato2021rna,
author = {Sato, Kengo and Akiyama, Manato and Sakakibara, Yasubumi},
journal = {Nature Communications},
month = feb,
number = 1,
pages = {941},
publisher = {Springer Science and Business Media LLC},
title = {{RNA} secondary structure prediction using deep learning with thermodynamic integration},
volume = 12,
year = 2021
}
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